Paket: last-align (1179-1 ve diğerleri)

last-align için bağlantılar

Debian Kaynakları:

last-align Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [last.cbrc.jp]

Benzer paketler:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Etiketler: Biyoloji: Nükleik Asitler, Alan: Biyoloji, field::biology:bioinformatics, implemented-in::c++, Rol: Program

last-align ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 4.2)

GCC support library
dep: libstdc++6 (>= 6)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: parallel

build and execute command lines from standard input in parallel
rec: python3

interactive high-level object-oriented language (default python3 version)
rec: python3-pil

Python Imaging Library (Python3)

last-align indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
mipsel	1179-1+b1	732,3 kB	4.556,0 kB	[dosya listesi]