Paket: tree-puzzle (5.3~rc16+dfsg-9)

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Etiketler: Alan: Biyoloji, Biyoinformatik, Geliştirildiği dil: implemented-in::c, interface::commandline, Rol: Program, Kapsam: Yardımcı Araç, Amaç: use::analysing, use::comparing, Desteklenen Biçimler: Düz Metin, Şununla çalışır: Ek etiket gerektiriyor

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