Källkodspaket: roary (3.13.0+dfsg-1)
Länkar för roary
Debianresurser:
Ansvariga:
Externa resurser:
- Hemsida [sanger-pathogens.github.io]
Följande binärpaket byggs från detta källkodspaket:
- roary
- high speed stand alone pan genome pipeline
Andra paket besläktade med roary
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- arkitekturoberoende bygg-beroende
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- adep:
debhelper
(>= 12~)
- helper programs for debian/rules
-
- adep:
dh-dist-zilla
- debhelper add-on to call dzil build and clean up after the build
-
- adep:
libdist-zilla-plugin-podweaver-perl
- Dist::Zilla plugin to use Pod::Weaver to generate Pod documentation
-
- adep:
bioperl
(>= 1.7.4)
- Perl tools for computational molecular biology
-
- adep:
libarray-utils-perl
- collection of small utils for array manipulation
-
- adep:
libenv-path-perl
- Perl module implementing advanced operations on path variables
-
- adep:
libexception-class-perl
- module that allows you to declare real exception classes in Perl
-
- adep:
libfile-find-rule-perl
- module to search for files based on rules
-
- adep:
libfile-grep-perl
- module for pattern matching in a series of files
-
- adep:
libfile-slurper-perl
- simple, sane and efficient module to slurp a file
-
- adep:
libfile-which-perl
- Perl module for searching paths for executable programs
-
- adep:
libfindbin-libs-perl
- Perl module to use a relative path for lib directories
-
- adep:
libgraph-perl
- Perl module for graph data structures and algorithms
-
- adep:
libgraph-readwrite-perl
- module for reading and writing directed graphs
-
- adep:
liblog-log4perl-perl
- Perl port of the widely popular log4j logging package
-
- adep:
libmoose-perl
- modern Perl object system framework
-
- adep:
libperlio-utf8-strict-perl
- fast and correct UTF-8 Perl IO module
-
- adep:
libtest-most-perl
- Perl module with the most commonly needed test functions and features
-
- adep:
libtest-file-perl
- Perl module to test file attributes
-
- adep:
libtest-files-perl
- module to ease testing with files and directories
-
- adep:
libtest-output-perl
- perl module to test stdout and stderr messages
-
- adep:
libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
-
- adep:
bedtools
- suite of utilities for comparing genomic features
-
- adep:
cd-hit
- suite of programs designed to quickly group sequences
-
- adep:
ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- adep:
mcl
- Markov Cluster algorithm
-
- adep:
parallel
- build and execute command lines from standard input in parallel
-
- adep:
prank
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
-
- adep:
r-base-core
- GNU R core of statistical computation and graphics system
-
- adep:
mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- adep:
fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- idep:
perl
- Larry Wall's Practical Extraction and Report Language
