Källkodspaket: salmon (0.12.0+ds1-1)
Länkar för salmon
Debianresurser:
Ansvariga:
Externa resurser:
Följande binärpaket byggs från detta källkodspaket:
- salmon
- wicked-fast transcript quantification from RNA-seq data
Andra paket besläktade med salmon
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- arkitekturoberoende bygg-beroende
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- adep:
debhelper
(>= 11~)
- helper programs for debian/rules
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- adep:
cmake
- cross-platform, open-source make system
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- adep:
libboost-filesystem-dev
- filesystem operations (portable paths, iteration over directories, etc) in C++ (default version)
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- adep:
libboost-system-dev
- Operating system (e.g. diagnostics support) library (default version)
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- adep:
libboost-iostreams-dev
- Boost.Iostreams Library development files (default version)
-
- adep:
libboost-thread-dev
- portable C++ multi-threading (default version)
-
- adep:
libboost-program-options-dev
- program options library for C++ (default version)
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- adep:
libboost-timer-dev
- C++ wall clock and CPU process timers (default version)
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- adep:
libjellyfish-2.0-dev
(>> 2.2.3-2)
- count k-mers in DNA sequences (development files of jellyfish)
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- adep:
libpthread-stubs0-dev
- pthread stubs not provided by native libc, development files
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- adep:
libsparsehash-dev
- Google's extremely memory-efficient C++ hash_map implementation
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- adep:
libdivsufsort-dev
- libdivsufsort header files
-
- adep:
libbwa-dev
- Burrows-Wheeler Aligner source files
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- adep:
pkg-config
- manage compile and link flags for libraries
-
- adep:
libjemalloc-dev
- development files and documentation for jemalloc
-
- adep:
libcereal-dev
- C++11 library for serialization
-
- adep:
libtbb-dev
- parallelism library for C++ - development files
-
- adep:
libgff-dev
- GFF/GTF parsing from cufflinks as a library
-
- adep:
libstaden-read-dev
- development files for libstaden-read
-
- adep:
libspdlog-dev
- Very fast, header only, C++ logging library
-
- adep:
libtclap-dev
- Templatized command-line argument parser for C++
-
- adep:
help2man
- Automatic manpage generator
-
- adep:
sphinx-doc
- documentation generator for Python projects - documentation
-
- adep:
python3-sphinx
- documentation generator for Python projects (implemented in Python 3)
-
- adep:
python3-sphinx-rtd-theme
- sphinx theme from readthedocs.org (Python 3)
-
- adep:
zlib1g-dev
- compression library - development
-
- adep:
libeigen3-dev
- lightweight C++ template library for linear algebra
-
- adep:
libbz2-dev
- high-quality block-sorting file compressor library - development
-
- adep:
liblzma-dev
- XZ-format compression library - development files
-
- adep:
rapmap-dev
(>= 0.12.0~)
- rapmap - rapid sensitive and accurate DNA read mapping (some headers)
