Paket: r-bioc-scater (1.30.1+ds-2)

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Liknande paket:

Single-Cell Analysis Toolkit for Gene Expression Data in R

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Andra paket besläktade med r-bioc-scater

beror

rekommenderar

föreslår

enhances

dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.18

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-bioc-beachmat

I/O for several formats storing matrix data
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocneighbors

Nearest Neighbor Detection for Bioconductor Packages
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages
dep: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
dep: r-bioc-matrixgenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-scuttle

BioConductor single-cell RNA-Seq analysis utilities
dep: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-ggbeeswarm

GNU R categorical scatter (violin point) plots
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-ggrastr

Bioconductor rasterize layers for 'ggplot2'
dep: r-cran-ggrepel

auto-position non-overlapping text labels in plots
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-pheatmap

GNU R package to create pretty heatmaps
dep: r-cran-rcolorbrewer

GNU R package providing suitable color palettes
dep: r-cran-rcppml

GNU R Rcpp Machine Learning Library
dep: r-cran-rlang

Functions for Base Types and Core R and 'Tidyverse' Features
dep: r-cran-rtsne

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
dep: r-cran-uwot

GNU R uniform manifold approximation and projection (UMAP)
dep: r-cran-viridis

GNU R package for color maps from matplotlib

sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: r-bioc-densvis

density-preserving data visualization via non-linear dimensionality reduction
sug: r-bioc-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets
sug: r-cran-cowplot

GNU R streamlined plot theme and plot annotations for 'ggplot2'
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-robustbase

GNU R package providing basic robust statistics
sug: r-cran-scattermore

GNU R scatterplots with more points
sug: r-cran-testthat

GNU R testsuite

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	525,8 kbyte	650,0 kbyte	[filförteckning]