Paket: nanopolish (0.14.0-1 och andra) [debports]

Länkar för nanopolish

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Externa resurser:

Hemsida [github.com]

Liknande paket:

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andra paket besläktade med nanopolish

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.34)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC stödbibliotek
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhdf5-103-1t64

HDF5 C runtime files - serial version
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libslow5-0 (>= 0.5.1)

library for reading & writing SLOW5 files
dep: libstdc++6 (>= 13.1)

GNU standardbibliotek v3 för C++
dep: libstreamvbyte0 (>= 0.4.1)

fast integer compression in C using the StreamVByte codec
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4)

Kompressionsbibliotek - körtidspaket

rec: python3-biopython

Python3 library for bioinformatics
rec: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)

sug: make

utility for directing compilation
sug: perl

Larry Wall's Practical Extraction and Report Language

Hämta nanopolish

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
x32 (inofficiell anpassning)	0.14.0-1+b1	2.144,4 kbyte	9.241,0 kbyte	[filförteckning]