Paket: tipp (1.0+dfsg-3)

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Hemsida [github.com]

Liknande paket:

tool for Taxonomic Identification and Phylogenetic Profiling

TIPP is a modification of SEPP for classifying query sequences (i.e. reads) using phylogenetic placement.

TIPP inserts each read into a taxonomic tree and uses the insertion location to identify the taxonomic lineage of the read. The novel idea behind TIPP is that rather than using the single best alignment and placement for taxonomic identification, it uses a collection of alignments and placements and considers statistical support for each alignment and placement.

TIPP can also be used for abundance estimation by computing an abundance profile on the reads binned to marker genes in a reference dataset.

Andra paket besläktade med tipp

beror

rekommenderar

föreslår

enhances

dep: default-jre

Standard Java or Java compatible Runtime
dep: libgoogle-gson-java

Converts Java objects into their JSON representation
dep: libjenkins-json-java

Library for transforming Java objects between XML and JSON
dep: libjson-java

library for transforming Java objects and XML to JSON and back again
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)
dep: sepp (>= 4.5.1+really4.5.1+dfsg-1~)

phylogeny with ensembles of Hidden Markov Models

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	127,5 kbyte	222,0 kbyte	[filförteckning]
arm64	127,5 kbyte	222,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	127,5 kbyte	222,0 kbyte	[filförteckning]