Paket: bifrost (1.3.1-1)

Länkar för bifrost

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Externa resurser:

Hemsida [github.com]

Liknande paket:

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andra paket besläktade med bifrost

beror

rekommenderar

föreslår

enhances

dep: libbifrost0 (>= 1.3.1)

library for parallel construction, indexing and querying of de Bruijn graphs
dep: libc6 (>= 2.34)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.4)

GCC stödbibliotek
dep: libstdc++6 (>= 13.1)

GNU standardbibliotek v3 för C++
dep: zlib1g (>= 1:1.1.4)

Kompressionsbibliotek - körtidspaket

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
riscv64	505,7 kbyte	1.006,0 kbyte	[filförteckning]