Paket: progressivemauve (1.2.0+4713+dfsg-5 och andra) [debports]

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Externa resurser:

Hemsida [darlinglab.org]

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multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Andra paket besläktade med progressivemauve

beror

rekommenderar

föreslår

enhances

dep: libboost-filesystem1.83.0 (>= 1.83.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libboost-program-options1.83.0 (>= 1.83.0)

program options library for C++
dep: libc6 (>= 2.34)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.4)

GCC stödbibliotek
dep: libgenome0 (>= 1.3.11+svn20110227.4616)

toolkit for developing bioinformatic related software
dep: libmems1 (>= 1.6.0+4725)

library to support DNA string matching and comparative genomics
dep: libstdc++6 (>= 13.1)

GNU standardbibliotek v3 för C++

enh: mauve-aligner

multiple genome alignment

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
ppc64 (inofficiell anpassning)	1.2.0+4713+dfsg-5+b2	852,6 kbyte	7.313,0 kbyte	[filförteckning]