Paket: circlator (1.5.6-11)

Länkar för circlator

Debianresurser:

Hämta källkodspaketet circlator:

Ansvariga:

Externa resurser:

Hemsida [sanger-pathogens.github.io]

Liknande paket:

circularize genome assemblies

Circlator is a tool to automate assembly circularization for bacterial and small eukaryotic genomes and produce accurate linear representations of circular sequences.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::python, Role: Program, Vetenskap: science::calculation, works-with::biological-sequence, Works with: Filer

Andra paket besläktade med circlator

beror

rekommenderar

föreslår

enhances

dep: bwa

Burrows-Wheeler Aligner
dep: canu

single molecule sequence assembler for genomes
dep: fastaq

FASTA and FASTQ file manipulation tools
dep: mummer

Efficient sequence alignment of full genomes
dep: prodigal

Microbial (bacterial and archaeal) gene finding program
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-openpyxl

Python 3 module to read/write OpenXML xlsx/xlsm files
dep: python3-packaging

core utilities for python3 packages
dep: python3-pymummer

Python 3 interface to MUMmer
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

rec: spades

genome assembler for single-cell and isolates data sets

Hämta circlator

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
all	4.496,8 kbyte	11.642,0 kbyte	[filförteckning]