Paket: python3-loompy (3.0.7+dfsg-3)

Länkar för python3-loompy

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Hemsida [github.com]

Liknande paket:

access loom formatted files for bioinformatics

Loom is an efficient file format for very large omics datasets, consisting of a main matrix, optional additional layers, a variable number of row and column annotations. Loom also supports sparse graphs. Loom files are used to store single-cell gene expression data: the main matrix contains the actual expression values (one column per cell, one row per gene); row and column annotations contain metadata for genes and cells, such as Name, Chromosome, Position (for genes), and Strain, Sex, Age (for cells).

Loom files (.loom) are created in the HDF5 file format, which supports an internal collection of numerical multidimensional datasets. HDF5 is supported by many computer languages, including Java, MATLAB, Mathematica, Python, R, and Julia. .loom files are accessible from any language that supports HDF5.

Andra paket besläktade med python3-loompy

beror

rekommenderar

föreslår

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-h5py

general-purpose Python interface to hdf5
dep: python3-numba

native machine code compiler for Python 3
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-numpy-groupies

performs operations on/with subsets of n-dim arrays
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pkg-resources

Package Discovery and Resource Access using pkg_resources
dep: python3-scipy

scientific tools for Python 3

Hämta python3-loompy

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Arkitektur	Paketstorlek	Installerad storlek	Filer
mips64el	39,9 kbyte	189,0 kbyte	[filförteckning]