Paket: umis (1.0.9-1) [debports]

Länkar för umis

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Externa resurser:

Hemsida [github.com]

Liknande paket:

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Andra paket besläktade med umis

beror

rekommenderar

föreslår

enhances

dep: libc6.1 (>= 2.1.3)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.12)

dep: python3 (>= 3.11~)
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-regex

alternative regular expression module (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-toolz

List processing tools and functional utilities

sug: umis-examples

tools for processing UMI RNA-tag data (examples)

Hämta umis

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	26,1 kbyte	157,0 kbyte	[filförteckning]