Paket: libfreecontact0v5 (1.0.21-7 och andra)

Länkar för libfreecontact0v5

Debianresurser:

Hämta källkodspaketet freecontact:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Laszlo Kajan (QA-sida)
Andreas Tille (QA-sida)

Externa resurser:

Hemsida [rostlab.org]

Liknande paket:

fast protein contact predictor library

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

Märken: Role: Shared Library

Andra paket besläktade med libfreecontact0v5

beror

rekommenderar

föreslår

enhances

dep: libblas3

Basic Linear Algebra Reference implementations, shared library

eller libblas.so.3

virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base
dep: libc6 (>= 2.15)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc1 (>= 1:3.0)

GCC stödbibliotek
dep: libgfortran5 (>= 8)

Runtime library for GNU Fortran applications
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: liblapack3

Library of linear algebra routines 3 - shared version

eller liblapack.so.3

virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas-base
dep: libquadmath0 (>= 4.6)

GCC Quad-Precision Math Library
dep: libstdc++6 (>= 5.2)

GNU standardbibliotek v3 för C++

Hämta libfreecontact0v5

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
i386	1.0.21-7+b1	61,6 kbyte	165,0 kbyte	[filförteckning]