[ Källkod: seqtools ]
Paket: dotter (4.44.1+dfsg-3)
Länkar för dotter
Debianresurser:
Hämta källkodspaketet seqtools:
- [seqtools_4.44.1+dfsg-3.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-3.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [www.sanger.ac.uk]
Liknande paket:
detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two sequences.
* Every residue in one sequence is compared to every residue in the other, and a matrix of scores is calculated. * One sequence is plotted on the x-axis and the other on the y-axis. * Noise is filtered out so that alignments appear as diagonal lines. * Pairwise scores are averaged over a sliding window to make the score matrix more intelligible. * The averaged score matrix forms a three-dimensional landscape, with the two sequences in two dimensions and the height of the peaks in the third. This landscape is projected onto two dimensions using a grey-scale image - the darker grey of a peak, the higher the score is. * The contrast and threshold of the grey-scale image can be adjusted interactively, without having to recalculate the score matrix. * An Alignment Tool is provided to examine the sequence alignment that the grey-scale image represents. * Known high-scoring pairs can be loaded from a GFF file and overlaid onto the plot. * Gene models can be loaded from GFF and displayed alongside the relevant axis. * Compare a sequence against itself to find internal repeats. * Find overlaps between multiple sequences by making a dot-plot of all sequences versus themselves. * Run Dotter in batch mode to create large, time-consuming dot-plots as a background process.
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Hämta dotter
Arkitektur | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|
amd64 | 206,1 kbyte | 409,0 kbyte | [filförteckning] |
arm64 | 196,7 kbyte | 397,0 kbyte | [filförteckning] |
armhf | 188,2 kbyte | 299,0 kbyte | [filförteckning] |
i386 | 215,1 kbyte | 439,0 kbyte | [filförteckning] |