Paket: r-bioc-shortread (1.40.0-1)

Länkar för r-bioc-shortread

Debianresurser:

Hämta källkodspaketet r-bioc-shortread:

Ansvariga:

Externa resurser:

Hemsida [bioconductor.org]

Liknande paket:

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Andra paket besläktade med r-bioc-shortread

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.17)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc1 (>= 1:3.0)

GCC stödbibliotek
dep: libgomp1 (>= 4.2.1)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU standardbibliotek v3 för C++
dep: r-api-3.5

virtuellt paket som tillhandahålls av r-base-core
dep: r-base-core (>= 3.5.1-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.23.3)

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.47.6)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.15.2)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicalignments (>= 1.15.6)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-genomicranges (>= 1.31.8)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.13.12)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rsamtools (>= 1.31.2)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.17.25)

BioConductor S4 implementation of vectors and lists
dep: r-cran-hwriter

HTML Writer - Outputs R objects in HTML format
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-latticeextra

GNU R package of additional graphical displays based on lattice
dep: zlib1g (>= 1:1.1.4)

Kompressionsbibliotek - körtidspaket

rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations

Hämta r-bioc-shortread

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
arm64	4.901,5 kbyte	7.354,0 kbyte	[filförteckning]