Paket: python-pbalign (0.3.2-1)

Länkar för python-pbalign

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Hemsida [github.com]

Liknande paket:

map Pacific Biosciences reads to reference DNA sequences (Python2)

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.

Andra paket besläktade med python-pbalign

beror

rekommenderar

föreslår

enhances

dep: blasr (>= 5.3+0)

mapping single-molecule sequencing reads
dep: python

interactive high-level object-oriented language (Python2 version)
dep: python-pbcommand

common command-line interface for Pacific Biosciences analysis modules
dep: python-pbcore

Python 2 library for processing PacBio data files
dep: python-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 2)

rec: hdf5-tools

Hierarchical Data Format 5 (HDF5) - Runtime tools
rec: python-pbh5tools

tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

sug: bowtie2

ultrafast memory-efficient short read aligner
sug: gmap

spliced and SNP-tolerant alignment for mRNA and short reads
sug: pbalign-doc

documentation for pbalign

Hämta python-pbalign

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	36,5 kbyte	224,0 kbyte	[filförteckning]