Paket: libseqlib2 (1.2.0+dfsg-4)
Länkar för libseqlib2
Debianresurser:
Hämta källkodspaketet libseqlib:
- [libseqlib_1.2.0+dfsg-4.dsc]
- [libseqlib_1.2.0+dfsg.orig.tar.xz]
- [libseqlib_1.2.0+dfsg-4.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
Andra paket besläktade med libseqlib2
|
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [ej amd64, arm64, ppc64el]
-
- dep: libfml0 (>= 0.1+git20190320.b499514)
- library for assembling Illumina short reads in small regions
-
- dep: libgcc-s1 (>= 3.0) [ej armel, armhf, mipsel]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [mipsel]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libjsoncpp24 (>= 1.9.4)
- library for reading and writing JSON for C++
-
- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 9) [ej armel, armhf]
-
- dep: zlib1g (>= 1:1.1.4)
- Kompressionsbibliotek - körtidspaket
Hämta libseqlib2
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 158,6 kbyte | 565,0 kbyte | [filförteckning] |
| arm64 | 144,6 kbyte | 528,0 kbyte | [filförteckning] |
| armel | 135,5 kbyte | 484,0 kbyte | [filförteckning] |
| armhf | 139,2 kbyte | 391,0 kbyte | [filförteckning] |
| i386 | 172,1 kbyte | 566,0 kbyte | [filförteckning] |
| mips64el | 145,6 kbyte | 613,0 kbyte | [filförteckning] |
| mipsel | 146,5 kbyte | 590,0 kbyte | [filförteckning] |
| ppc64el | 167,1 kbyte | 661,0 kbyte | [filförteckning] |
| s390x | 142,8 kbyte | 572,0 kbyte | [filförteckning] |