Paket: r-bioc-multtest (2.54.0-1)

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Bioconductor resampling-based multiple hypothesis testing

Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

Andra paket besläktade med r-bioc-multtest

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föreslår

enhances

dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.16

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-cran-mass

GNU R package of Venables and Ripley's MASS
dep: r-cran-survival

GNU R package for survival analysis

sug: r-cran-snow

GNU R package for 'simple network of workstations'

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Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	825,8 kbyte	1.071,0 kbyte	[filförteckning]
arm64	823,9 kbyte	1.088,0 kbyte	[filförteckning]
armel	824,7 kbyte	1.087,0 kbyte	[filförteckning]
armhf	822,0 kbyte	1.087,0 kbyte	[filförteckning]
i386	826,6 kbyte	1.074,0 kbyte	[filförteckning]
mips64el	823,9 kbyte	1.092,0 kbyte	[filförteckning]
mipsel	823,6 kbyte	1.090,0 kbyte	[filförteckning]
ppc64el	829,9 kbyte	1.088,0 kbyte	[filförteckning]
s390x	824,4 kbyte	1.075,0 kbyte	[filförteckning]