Paket: r-bioc-genomicranges (1.50.2+dfsg-1)

Länkar för r-bioc-genomicranges

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Liknande paket:

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Andra paket besläktade med r-bioc-genomicranges

beror

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föreslår

enhances

dep: libc6 (>= 2.17) [arm64, ppc64el]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.4) [ej arm64, ppc64el]
dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.16

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.37.0)

generic functions for Bioconductor
dep: r-bioc-genomeinfodb (>= 1.15.2)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-iranges (>= 2.31.2)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-s4vectors (>= 0.27.12)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-xvector (>= 0.29.2)

BioConductor representation and manpulation of external sequences

sug: r-bioc-annotate

BioConductor annotation for microarrays
sug: r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor
sug: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biostrings (>= 2.25.3)

GNU R string objects representing biological sequences
sug: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq
sug: r-bioc-edger

Empirical analysis of digital gene expression data in R
sug: r-bioc-genomicalignments

BioConductor representation and manipulation of short genomic alignments
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-gviz

Plotting data and annotation information along genomic coordinates
sug: r-bioc-keggrest

GNU R client-side REST access to KEGG
sug: r-bioc-rsamtools (>= 1.13.53)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
sug: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
sug: r-bioc-summarizedexperiment (>= 0.1.5)

BioConductor assay container
sug: r-bioc-variantannotation

BioConductor annotation of genetic variants
sug: r-cran-digest

GNU R package for 'hash digest' of R data structures
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-matrix

GNU R package of classes for dense and sparse matrices
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-runit

GNU R package providing unit testing framework

Hämta r-bioc-genomicranges

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	1.753,8 kbyte	2.743,0 kbyte	[filförteckning]
arm64	1.753,2 kbyte	2.759,0 kbyte	[filförteckning]
armel	1.751,3 kbyte	2.758,0 kbyte	[filförteckning]
armhf	1.751,5 kbyte	2.758,0 kbyte	[filförteckning]
i386	1.754,3 kbyte	2.750,0 kbyte	[filförteckning]
mips64el	1.751,2 kbyte	2.764,0 kbyte	[filförteckning]
mipsel	1.751,3 kbyte	2.763,0 kbyte	[filförteckning]
ppc64el	1.753,6 kbyte	2.759,0 kbyte	[filförteckning]
s390x	1.752,9 kbyte	2.743,0 kbyte	[filförteckning]