Paket: r-bioc-structuralvariantannotation (1.13.0+ds-1)

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Liknande paket:

Variant annotations for structural variants

StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

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beror

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föreslår

enhances

dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biostrings

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-bioc-variantannotation

BioConductor annotation of genetic variants
dep: r-cran-assertthat

GNU R easy pre and post assertions
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-rlang

Functions for Base Types and Core R and 'Tidyverse' Features
dep: r-cran-stringr

Make it easier to work with strings

sug: r-bioc-biovizbase

GNU R basic graphic utilities for visualization of genomic data
sug: r-bioc-ggbio

Visualization tools for genomic data
sug: r-cran-devtools

Tools to Make Developing R Packages Easier
sug: r-cran-ggplot2

implementation of the Grammar of Graphics
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-roxygen2

in-line documentation for GNU R
sug: r-cran-testthat (>= 2.1.0)

GNU R testsuite
sug: r-cran-tidyverse

Easily Install and Load the 'Tidyverse'

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	392,4 kbyte	1.298,0 kbyte	[filförteckning]