Paket: yanagiba (1.0.0-5)

Länkar för yanagiba

Debianresurser:

Hämta källkodspaketet yanagiba:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Nilesh Patra (QA-sida)
Pranav Ballaney (QA-sida)

Externa resurser:

Hemsida [github.com]

Liknande paket:

filter low quality Oxford Nanopore reads basecalled with Albacore

Yanagiba is used to filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. It takes fastq.gz and an Albacore summary file as input. If no Albacore summary file is provided attempt to calculate mean qscore from directly from fastq file using NanoMath. Note: Calculated quality scores appear to be lower for reads called with Metrichor, you may need to lower your minqual setting in this case.

Andra paket besläktade med yanagiba

beror

rekommenderar

föreslår

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-nanomath

simple math function for other Oxford Nanopore processing scripts
dep: python3-pandas

data structures for "relational" or "labeled" data

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	25,0 kbyte	57,0 kbyte	[filförteckning]