Balík: r-cran-alakazam (1.3.0-1) [debports]

Odkazy pre r-cran-alakazam

Zdroje Debian:

Hlásenia chýb

Stiahnuť zdrojový balík :

Nenájdený

Správcovia:

Externé zdroje:

Domovská stránka [cran.r-project.org]

Podobné balíky:

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Ostatné balíky súvisiace s balíkom r-cran-alakazam

závisí

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navrhuje

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dep: libc6.1 (>= 2.37)

knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6.1-udeb
dep: libstdc++6 (>= 13.1)

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dep: libunwind8

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dep: r-api-4.0

virtuálny balík poskytovaný balíkom r-base-core
dep: r-bioc-biostrings (>= 2.56.0)

GNU R string objects representing biological sequences
dep: r-bioc-genomicalignments (>= 1.24.0)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-iranges (>= 2.22.2)

GNU R low-level containers for storing sets of integer ranges
dep: r-cran-airr (>= 1.4.1)

GNU R AIRR data representation reference library
dep: r-cran-ape

GNU R package for Analyses of Phylogenetics and Evolution
dep: r-cran-dplyr (>= 1.0)

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dep: r-cran-matrix (>= 1.3-0)

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škálovacie funkcie na vizualizáciu
dep: r-cran-seqinr

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dep: r-cran-stringi

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sug: r-cran-knitr

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