[ Zdroj: roary ]
Balík: roary (3.13.0+dfsg-1)
Odkazy pre roary
Zdroje Debian:
Stiahnuť zdrojový balík roary:
Správcovia:
Externé zdroje:
- Domovská stránka [sanger-pathogens.github.io]
Podobné balíky:
high speed stand alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.
Ostatné balíky súvisiace s balíkom roary
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- dep: bedtools
- suite of utilities for comparing genomic features
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- dep: bioperl (>= 1.7.4)
- nástroje jazyka Perl na výpočtovú molekulárnu biológiu
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libarray-utils-perl
- collection of small utils for array manipulation
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- dep: libdigest-md5-file-perl
- rozšírenie jazyka Perl na výpočet súčtov MD5 súborov a url
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- dep: libenv-path-perl
- Perl module implementing advanced operations on path variables
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- dep: libexception-class-perl
- modul jazyka Perl, ktorý vám umožňuje deklarovať skutočné triedy výnimiek
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- dep: libfile-find-rule-perl
- modul na hľadanie súborov na základe pravidiel
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- dep: libfile-grep-perl
- module for pattern matching in a series of files
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- dep: libfile-slurper-perl
- jednoduchý, rozumný a efektívny modul na sťahovanie súborov
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- dep: libfile-which-perl
- modul Perlu na nájdenie ciest k spustiteľným programom
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- dep: libfindbin-libs-perl
- Perl module to use a relative path for lib directories
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- dep: libgraph-perl
- Perl module for graph data structures and algorithms
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- dep: libgraph-readwrite-perl
- module for reading and writing directed graphs
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- dep: liblog-log4perl-perl
- Perl port of the widely popular log4j logging package
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- dep: libmoose-perl
- moderná platforma objektového systému jazyka Perl
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- dep: libperlio-utf8-strict-perl
- fast and correct UTF-8 Perl IO module
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- dep: libtest-file-perl
- Perl module to test file attributes
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- dep: libtest-files-perl
- module to ease testing with files and directories
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- dep: libtest-most-perl
- Perl module with the most commonly needed test functions and features
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- dep: libtest-output-perl
- perl module to test stdout and stderr messages
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- dep: libtext-csv-perl
- manipulátor súborov CSV (pomocou XS alebo PurePerl)
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- dep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- dep: mcl
- Markov Cluster algorithm
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: parallel
- príprava a paralelné spúšťanie príkazových riadkov zo štandardného vstupu
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- dep: perl
- Practical Extraction and Report Language od Larryho Walla
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- dep: prank
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
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- dep: r-base-core
- jadro GNU R na štatistické výpočty a grafický systém
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- dep: r-cran-ggplot2
- implementácia Gramatiky grafiky
Stiahnuť roary
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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| all | 179.4 kB | 670.0 kB | [zoznam súborov] |