Balík: fitgcp (0.0.20150429-2)
Odkazy pre fitgcp
Zdroje Debian:
Stiahnuť zdrojový balík fitgcp:
Správcovia:
Externé zdroje:
- Domovská stránka [sourceforge.net]
Podobné balíky:
fitting genome coverage distributions with mixture models
Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses.
fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm.
Ostatné balíky súvisiace s balíkom fitgcp
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- dep: python
- interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia python2)
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- dep: python-numpy
- Numerical Python pridáva schopnosti rýchlych polí do jazyka Python
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- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- dep: python-scipy
- vedecké nástroje pre Python
Stiahnuť fitgcp
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
---|---|---|---|
amd64 | 12.2 kB | 50.0 kB | [zoznam súborov] |
arm64 | 12.2 kB | 50.0 kB | [zoznam súborov] |