[ Zdroj: centrifuge ]
Balík: centrifuge (1.0.3-2)
Odkazy pre centrifuge
Zdroje Debian:
Stiahnuť zdrojový balík centrifuge:
Správcovia:
Externé zdroje:
- Domovská stránka [ccb.jhu.edu]
Podobné balíky:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Ostatné balíky súvisiace s balíkom centrifuge
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.14)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- podporná knižnica GCC
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- dep: libstdc++6 (>= 5.2)
- štandardná knižnica C++ GNU v3
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- dep: python
- interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia python2)
Stiahnuť centrifuge
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 518.4 kB | 1,650.0 kB | [zoznam súborov] |