Balík: atac (0~20150903+r2013-6)
Odkazy pre atac
Zdroje Debian:
Stiahnuť zdrojový balík kmer:
- [kmer_0~20150903+r2013-6.dsc]
- [kmer_0~20150903+r2013.orig.tar.gz]
- [kmer_0~20150903+r2013-6.debian.tar.xz]
Správcovia:
Externé zdroje:
- Domovská stránka [kmer.sourceforge.net]
Podobné balíky:
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
Ostatné balíky súvisiace s balíkom atac
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- dep: gnuplot
- program na interaktívne kreslenie riadený z príkazového riadka
tiež virtuálny balík poskytovaný balíkom gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: leaff
- biological sequence library utilities and applications
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- dep: libc6 (>= 2.14) [amd64]
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.7) [armhf, i386]
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- dep: libfile-which-perl
- modul Perlu na nájdenie ciest k spustiteľným programom
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- dep: libgcc1 (>= 1:3.0) [amd64, arm64]
- podporná knižnica GCC
- dep: libgcc1 (>= 1:3.5) [armhf]
- dep: libgcc1 (>= 1:4.2) [i386]
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- dep: libstdc++6 (>= 5.2)
- štandardná knižnica C++ GNU v3
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- dep: meryl
- in- and out-of-core kmer counting and utilities
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- dep: perl
- Practical Extraction and Report Language od Larryho Walla
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- dep: python
- interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia python2)
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- dep: python2.7
- interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia 2.7)
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- rec: kmer-examples
- sample data for kmer suite of tools for DNA sequence analysis
Stiahnuť atac
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 379.3 kB | 2,763.0 kB | [zoznam súborov] |
| arm64 | 362.8 kB | 2,547.0 kB | [zoznam súborov] |
| armhf | 361.8 kB | 2,145.0 kB | [zoznam súborov] |
| i386 | 403.4 kB | 3,001.0 kB | [zoznam súborov] |