[ Zdroj: parsnp ]
Balík: parsnp (1.5.4+dfsg-1)
Odkazy pre parsnp
Zdroje Debian:
Stiahnuť zdrojový balík parsnp:
Správcovia:
Externé zdroje:
- Domovská stránka [harvest.readthedocs.org]
Podobné balíky:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Ostatné balíky súvisiace s balíkom parsnp
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
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- dep: libc6 (>= 2.27)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- podporná knižnica GCC
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- dep: libgomp1 (>= 6)
- podporná knižnica GCC OpenMP (GOMP)
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 5.2)
- štandardná knižnica C++ GNU v3
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- schopnosti rýchlych polí do jazyka Python 3
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
Stiahnuť parsnp
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 185.2 kB | 1,881.0 kB | [zoznam súborov] |