Package: python3-cyvcf2 (0.30.28-1 and others) [debports]
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VCF parser based on htslib (Python 3)
This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.
cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.
This package installs the library for Python 3.
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Download python3-cyvcf2
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| m68k (unofficial port) | 0.30.28-1+b1 | 585.0 kB | 4,329.0 kB | [list of files] |