Package: mira-assembler (4.9.6-11) [debports]

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Whole Genome Shotgun and EST Sequence Assembler

The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.

The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.

The package provides the following executables: Binaries provided:

 * mira: for assembly of genome sequences
 * miramem: estimating memory needed to assemble projects.
 * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
 * miraconvert: is a tool to convert, extract and sometimes recalculate all
   kinds of data related to sequence assembly files.

Other Packages Related to mira-assembler

depends

recommends

suggests

enhances

dep: libboost-filesystem1.83.0 (>= 1.83.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-thread1.83.0 (>= 1.83.0)

portable C++ multi-threading
dep: libc6.1 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libexpat1 (>= 2.0.1)

XML parsing C library - runtime library
dep: libgcc-s1 (>= 3.4)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

rec: mira-rfam-12s-rrna

extract of RFAM 12 rRNA database

sug: mira-doc

documentation for the mira assembler

Download mira-assembler

Download for all available architectures
Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	2,591.6 kB	8,357.0 kB	[list of files]