Пакет исходного кода: salmon (0.12.0+ds1-1)
Ссылки для salmon
Ресурсы Debian:
Сопровождающие:
Внешние ресурсы:
Из этого пакета исходного кода собираются следующие двоичные пакеты:
- salmon
- wicked-fast transcript quantification from RNA-seq data
Другие пакеты, относящиеся к salmon
-
- adep:
debhelper
(>= 11~)
- вспомогательные программы для debian/rules
-
- adep:
cmake
- cross-platform, open-source make system
-
- adep:
libboost-filesystem-dev
- filesystem operations (portable paths, iteration over directories, etc) in C++ (default version)
-
- adep:
libboost-system-dev
- Operating system (e.g. diagnostics support) library (default version)
-
- adep:
libboost-iostreams-dev
- Boost.Iostreams Library development files (default version)
-
- adep:
libboost-thread-dev
- portable C++ multi-threading (default version)
-
- adep:
libboost-program-options-dev
- program options library for C++ (default version)
-
- adep:
libboost-timer-dev
- C++ wall clock and CPU process timers (default version)
-
- adep:
libjellyfish-2.0-dev
(>> 2.2.3-2)
- count k-mers in DNA sequences (development files of jellyfish)
-
- adep:
libpthread-stubs0-dev
- pthread stubs not provided by native libc, development files
-
- adep:
libsparsehash-dev
- Google's extremely memory-efficient C++ hash_map implementation
-
- adep:
libdivsufsort-dev
- libdivsufsort header files
-
- adep:
libbwa-dev
- Burrows-Wheeler Aligner source files
-
- adep:
pkg-config
- управление флагами компилятора и компоновщика для библиотек
-
- adep:
libjemalloc-dev
- development files and documentation for jemalloc
-
- adep:
libcereal-dev
- C++11 library for serialization
-
- adep:
libtbb-dev
- parallelism library for C++ - development files
-
- adep:
libgff-dev
- GFF/GTF parsing from cufflinks as a library
-
- adep:
libstaden-read-dev
- development files for libstaden-read
-
- adep:
libspdlog-dev
- Very fast, header only, C++ logging library
-
- adep:
libtclap-dev
- Templatized command-line argument parser for C++
-
- adep:
help2man
- автоматический генератор man-страниц
-
- adep:
sphinx-doc
- documentation generator for Python projects - documentation
-
- adep:
python3-sphinx
- documentation generator for Python projects (implemented in Python 3)
-
- adep:
python3-sphinx-rtd-theme
- sphinx theme from readthedocs.org (Python 3)
-
- adep:
zlib1g-dev
- библиотека сжатия (файлы для разработчиков)
-
- adep:
libeigen3-dev
- lightweight C++ template library for linear algebra
-
- adep:
libbz2-dev
- библиотека сжатия по алгоритму Барроуза—Уилера (версия для разработки)
-
- adep:
liblzma-dev
- XZ-format compression library - development files
-
- adep:
rapmap-dev
(>= 0.12.0~)
- rapmap - rapid sensitive and accurate DNA read mapping (some headers)
