Пакет: cutesv (2.1.0-2)

Ссылки для cutesv

Ресурсы Debian:

Исходный код cutesv:

Сопровождающие:

Внешние ресурсы:

Сайт [github.com]

Подобные пакеты:

comprehensive discovery of structural variations of genomic sequences

Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads.

cuteSV is a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools.

Другие пакеты, относящиеся к cutesv

зависимости

рекомендации

предложения

enhances

dep: python3

интерактивный высокоуровневый объектно-ориентированный язык (версия python3 по умолчанию)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-cigar

manipulate SAM cigar strings
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-sklearn

Python modules for machine learning and data mining - Python 3
dep: python3-vcf

Variant Call Format (VCF) parser for Python 3

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Архитектура	Размер пакета	В установленном виде	Файлы
all	36,0 Кб	222,0 Кб	[список файлов]