Пакет: augustus (3.5.0+dfsg-4) [debports]
Ссылки для augustus
Ресурсы Debian:
Исходный код :
Не найденСопровождающие:
Внешние ресурсы:
- Сайт [bioinf.uni-greifswald.de]
Подобные пакеты:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Другие пакеты, относящиеся к augustus
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- dep: augustus-data
- data files for AUGUSTUS
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- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- библиотека Boost.Iostreams
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- dep: libc6 (>= 2.38)
- библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libcolamd3 (>= 1:7.0.1)
- column approximate minimum degree ordering library for sparse matrices
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- dep: libgcc-s1 (>= 3.4)
- вспомогательная библиотека GCC
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- dep: libgsl28 (>= 2.8+dfsg)
- GNU Scientific Library (GSL) -- library package
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- dep: libgslcblas0 (>= 2.8)
- GNU Scientific Library (GSL) -- blas library package
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libmariadb3 (>= 3.0.0)
- MariaDB database client library
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- dep: libmysql++3t64
- MySQL C++ library bindings (runtime)
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- dep: libsqlite3-0 (>= 3.5.9)
- динамически подключаемая библиотека SQLite 3
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- dep: libstdc++6 (>= 14)
- стандартная библиотека GNU C++ версии 3
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- dep: zlib1g (>= 1:1.1.4)
- библиотека сжатия
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- sug: diamond-aligner
- accelerated BLAST compatible local sequence aligner
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- sug: libdbd-mysql-perl
- интерфейс к СУБД MariaDB/MySQL для Perl5
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- sug: libfile-which-perl
- Perl module for searching paths for executable programs
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- sug: libparallel-forkmanager-perl
- simple parallel processing fork manager for Perl
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- sug: libyaml-perl
- YAML Ain't Markup Language
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- sug: python3-biopython
- Python3 library for bioinformatics
Загрузка augustus
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| sparc64 (неофициальный перенос) | 1 681,8 Кб | 22 589,0 Кб | [список файлов] |