Пакет: r-bioc-isoformswitchanalyzer (2.2.0+ds-1)

Ссылки для r-bioc-isoformswitchanalyzer

Ресурсы Debian:

Исходный код r-bioc-isoformswitchanalyzer:

Сопровождающие:

Внешние ресурсы:

Сайт [bioconductor.org]

Подобные пакеты:

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

Другие пакеты, относящиеся к r-bioc-isoformswitchanalyzer

зависимости

рекомендации

предложения

enhances

dep: r-api-4.0

виртуальный пакет, предоставляемый r-base-core
dep: r-api-bioc-3.18

виртуальный пакет, предоставляемый r-bioc-biocgenerics
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.50.0)

GNU R string objects representing biological sequences
dep: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq
dep: r-bioc-edger

Empirical analysis of digital gene expression data in R
dep: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-limma

linear models for microarray data
dep: r-bioc-pfamanalyzer

GNU R identification of domain isotypes in pfam data
dep: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-saturn (>= 1.7.0)

scalable analysis of differential transcript usage for RNA-sequencing
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-bioc-sva

GNU R Surrogate Variable Analysis
dep: r-bioc-tximeta (>= 1.7.12)

Transcript Quantification Import with Automatic Metadata
dep: r-bioc-tximport (>= 1.7.1)

transcript-level estimates for biological sequencing
dep: r-bioc-xvector

BioConductor representation and manpulation of external sequences
dep: r-cran-dbi

GNU R package providing a generic database interface
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-futile.logger

logging utility for GNU R
dep: r-cran-ggplot2 (>= 3.3.5)

implementation of the Grammar of Graphics
dep: r-cran-gridextra

GNU R package with extensions for the grid package
dep: r-cran-magrittr

GNU R forward-pipe operator
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-rcolorbrewer

GNU R package providing suitable color palettes
dep: r-cran-rcurl

GNU R General network (HTTP/FTP/...) client interface
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-reshape2

Flexibly reshape data: a reboot of the reshape package
dep: r-cran-stringr

Make it easier to work with strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr

GNU R package to easily tidy data
dep: r-cran-venndiagram

Generate High-Resolution Venn and Euler Plots

sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats

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Архитектура	Размер пакета	В установленном виде	Файлы
s390x	4 010,6 Кб	4 701,0 Кб	[список файлов]