Пакет: r-bioc-annotationhub (2.22.0+dfsg-1)

Ссылки для r-bioc-annotationhub

Ресурсы Debian:

Исходный код r-bioc-annotationhub:

Сопровождающие:

Внешние ресурсы:

Сайт [bioconductor.org]

Подобные пакеты:

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Другие пакеты, относящиеся к r-bioc-annotationhub

зависимости

рекомендации

предложения

enhances

dep: r-api-4.0

виртуальный пакет, предоставляемый r-base-core
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виртуальный пакет, предоставляемый r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-annotationdbi (>= 1.31.19)

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-biocfilecache (>= 1.5.1)

GNU R management of files across sessions
dep: r-bioc-biocgenerics (>= 0.15.10)

generic functions for Bioconductor
dep: r-bioc-biocversion

set the appropriate version of Bioconductor packages
dep: r-bioc-interactivedisplaybase

base package for enabling powerful shiny web displays of Bioconductor objects
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-cran-biocmanager

access the Bioconductor project package repository
dep: r-cran-curl

GNU R modern and flexible web client for R
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-httr

GNU R tools for working with URLs and HTTP
dep: r-cran-rappdirs

GNU R application directories
dep: r-cran-rsqlite

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dep: r-cran-yaml

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rec: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biostrings

GNU R string objects representing biological sequences
sug: r-bioc-experimenthub

BioConductor client to access ExperimentHub resources
sug: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
sug: r-bioc-rsamtools

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
sug: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
sug: r-bioc-summarizedexperiment

BioConductor assay container
sug: r-bioc-variantannotation

BioConductor annotation of genetic variants
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming

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