Пакет: augur (11.0.0-1)

Ссылки для augur

Ресурсы Debian:

Исходный код augur:

Сопровождающие:

Внешние ресурсы:

Сайт [github.com]

Подобные пакеты:

pipeline components for real-time virus analysis

The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.

nextstrain is comprised of three components:

  * fauna: database and IO scripts for sequence and serological data
  * augur: informatic pipelines to conduct inferences from raw data
  * auspice: web app to visualize resulting inferences

Другие пакеты, относящиеся к augur

зависимости

рекомендации

предложения

enhances

dep: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
dep: iqtree

efficient phylogenetic software by maximum likelihood
dep: mafft

Multiple alignment program for amino acid or nucleotide sequences
dep: python3

интерактивный высокоуровневый объектно-ориентированный язык (версия python3 по умолчанию)
dep: python3-bcbio-gff

Python3 library to read and write Generic Feature Format
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-boto (>= 2.38.0)

Python interface to Amazon's Web Services - Python 3.x
dep: python3-cvxopt

Python3 package for convex optimization
dep: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)
dep: python3-ipdb

IPython-based pdb replacement (Python 3 version)
dep: python3-jsonschema

An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x
dep: python3-matplotlib (>= 1.5.1)

Python based plotting system in a style similar to Matlab (Python 3)
dep: python3-packaging

core utilities for python3 packages
dep: python3-pandas (>= 0.16.2)

data structures for "relational" or "labeled" data
dep: python3-schedule

Job scheduling for humans (Python 3)
dep: python3-seaborn (>= 0.6.0)

statistical visualization library for Python3
dep: python3-treetime

inference of time stamped phylogenies and ancestral reconstruction (Python 3)
dep: raxml

синтез филогенетических деревьев по методу максимального правдоподобия
dep: seqmagick

imagemagick-like frontend to Biopython SeqIO
dep: vcftools

Collection of tools to work with VCF files

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Архитектура	Размер пакета	В установленном виде	Файлы
all	138,2 Кб	606,0 Кб	[список файлов]