все параметры
[  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Источник: kallisto  ]

Пакет: kallisto (0.48.0+dfsg-3)

Ссылки для kallisto

Screenshot

Ресурсы Debian:

Исходный код kallisto:

Сопровождающие:

Внешние ресурсы:

Подобные пакеты:

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

Другие пакеты, относящиеся к kallisto

  • зависимости
  • рекомендации
  • предложения
  • enhances

Загрузка kallisto

Загрузить для всех доступных архитектур
Архитектура Размер пакета В установленном виде Файлы
amd64 268,5 Кб772,0 Кб [список файлов]