Pakiet: physamp (1.1.0-5)

Odnośniki dla physamp

Zasoby systemu Debian:

Pobieranie pakietu źródłowego physamp:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [jydu.github.io]

Podobne pakiety:

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Inne pakiety związane z physamp

wymaga

poleca

sugeruje

enhances

dep: libbpp-core4t64 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl12t64 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq12t64 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.34)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.5)

Biblioteka wspomagająca GCC
dep: libstdc++6 (>= 13.1)

Standardowa biblioteka GNU C++, wersja 3

Pobieranie physamp

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
armel	169,6 KiB	1 724,0 KiB	[lista plików]