Pakiet: cnvkit (0.9.10-2)

Odnośniki dla cnvkit

Zasoby systemu Debian:

Pobieranie pakietu źródłowego cnvkit:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [cnvkit.readthedocs.org]

Podobne pakiety:

Copy number variant detection from targeted DNA sequencing

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.

Inne pakiety związane z cnvkit

wymaga

poleca

sugeruje

enhances

dep: python3

Interaktywny, wysokopoziomowy i obiektowy język programowania (domyślna wersja Python 3)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pomegranate

Fast, flexible and easy to use probabilistic modelling
dep: python3-pyfaidx

efficient random access to fasta subsequences for Python 3
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-reportlab

ReportLab library to create PDF documents using Python3
dep: python3-scipy

scientific tools for Python 3
dep: python3-sklearn

Python modules for machine learning and data mining - Python 3
dep: r-bioc-dnacopy

R package: DNA copy number data analysis

Pobieranie cnvkit

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
all	19 044,6 KiB	94 731,0 KiB	[lista plików]