Pakiet: metaphlan2 (2.7.8-1)

Odnośniki dla metaphlan2

Zasoby systemu Debian:

Pobieranie pakietu źródłowego metaphlan2:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [bitbucket.org]

Podobne pakiety:

Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.

MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:

 * unambiguous taxonomic assignments;
 * accurate estimation of organismal relative abundance;
 * species-level resolution for bacteria, archaea, eukaryotes and
   viruses;
 * strain identification and tracking
 * orders of magnitude speedups compared to existing methods.
 * metagenomic strain-level population genomics

Inne pakiety związane z metaphlan2

wymaga

poleca

sugeruje

enhances

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: metaphlan2-data

data package for Metagenomic Phylogenetic Analysis
dep: python

Interaktywny, wysokopoziomowy język obiektowy (wersja Python2)
dep: python-biom-format

Biological Observation Matrix (BIOM) format (Python 2)
dep: python-msgpack

Python implementation of MessagePack format
dep: python-pandas

data structures for "relational" or "labeled" data

Pobieranie metaphlan2

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