Pakiet: soapsnp (1.03-5)

Odnośniki dla soapsnp

Zasoby systemu Debian:

Pobieranie pakietu źródłowego soapsnp:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [soap.genomics.org.cn]

Podobne pakiety:

resequencing utility that can assemble consensus sequence of genomes

For getting ideas on the cause of diseases or their response to therapy, and for understanding either for a particular patient, doctors around the globe are starting to look at the genes or the whole genome and how that sequence is different from a healthy / well responding individual.

SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). The program is a resequencing utility. It assembles the consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on a known reference. SNPs can then be identified on the consensus sequence through the comparison with the reference.

SOAPsnp uses a method based on Bayes' theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors. All these kinds of information was integrated into a single quality score for each base in PHRED scale to measure the accuracy of consensus calling. Currently, it supports the alignment format of SOAPaligner (soap2).

Inne pakiety związane z soapsnp

wymaga

poleca

sugeruje

enhances

dep: libc6 (>= 2.34)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.0) [nie armel, armhf, i386, mipsel]

Biblioteka wspomagająca GCC

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libstdc++6 (>= 5.2)

Standardowa biblioteka GNU C++, wersja 3

sug: genomics.cn-soapsnp

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Pobieranie soapsnp

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	48,6 KiB	118,0 KiB	[lista plików]
arm64	43,5 KiB	146,0 KiB	[lista plików]
armel	41,2 KiB	97,0 KiB	[lista plików]
armhf	40,3 KiB	77,0 KiB	[lista plików]
i386	48,6 KiB	117,0 KiB	[lista plików]
mips64el	49,3 KiB	149,0 KiB	[lista plików]
mipsel	49,6 KiB	147,0 KiB	[lista plików]
ppc64el	52,4 KiB	146,0 KiB	[lista plików]
s390x	46,8 KiB	122,0 KiB	[lista plików]