[ Bron: multiqc ]
Pakket: multiqc (1.18+dfsg-1)
Verwijzigingen voor multiqc
Debian bronnen:
Het bronpakket multiqc downloaden:
- [multiqc_1.18+dfsg-1.dsc]
- [multiqc_1.18+dfsg.orig-debian-tests-data.tar.xz]
- [multiqc_1.18+dfsg.orig.tar.xz]
- [multiqc_1.18+dfsg-1.debian.tar.xz]
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Andreas Tille (QA-pagina)
- Steffen Moeller (QA-pagina)
Externe bronnen:
- Homepage [multiqc.info]
Vergelijkbare pakketten:
output integration for RNA sequencing across tools and samples
The sequencing of DNA or RNA with current high-throughput technologies involves an array of tools and these are applied over a range of samples. It is easy to loose oversight. And gathering the data and forwarding them in a readable manner to the individuals who took the samples is a challenge for a tool in itself. Well. Here it is. MultiQC aggregates the output of multiple tools into a single report.
Reports are generated by scanning given directories for recognised log files. These are parsed and a single HTML report is generated summarising the statistics for all logs found. MultiQC reports can describe multiple analysis steps and large numbers of samples within a single plot, and multiple analysis tools making it ideal for routine fast quality control.
Andere aan multiqc gerelateerde pakketten
|
|
|
|
-
- dep: fonts-glyphicons-halflings
- icons made for smaller graphic
-
- dep: libjs-bootstrap
- HTML, CSS and JS framework
-
- dep: libjs-jquery
- JavaScript library for dynamic web applications
-
- dep: libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
-
- dep: libjs-jquery-ui
- JavaScript UI library for dynamic web applications
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
-
- dep: python3-coloredlogs
- colored terminal output for Python 3's logging module
-
- dep: python3-distutils
- distutils package for Python 3.x
-
- dep: python3-humanfriendly
- Python3 library to make user friendly text interfaces
-
- dep: python3-humanize
- Python Humanize library (Python 3)
-
- dep: python3-importlib-metadata
- library to access the metadata for a Python package - Python 3.x
-
- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
-
- dep: python3-lzstring
- LZ-based compression algorithm for Python (Python 3 version)
-
- dep: python3-markdown
- text-to-HTML conversion library/tool (Python 3 version)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
-
- dep: python3-packaging
- core utilities for python3 packages
-
- dep: python3-pyaml-env
- Python3 YAML configuration with environment variables parsing
-
- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
-
- dep: python3-rich
- render rich text, tables, progress bars, syntax highlighting, markdown and more
-
- dep: python3-rich-click
- creating beautiful command line interfaces for Python3
-
- dep: python3-simplejson
- simple, fast, extensible JSON encoder/decoder for Python 3.x
-
- dep: python3-spectra
- Easy color scales and color conversion for Python (Python 3 version)
-
- dep: python3-yaml
- YAML parser and emitter for Python3
-
- rec: libjs-filesaver
- Client-side, HTML5 library for saving local files
-
- rec: node-clipboard
- Node.js module to copy to clipboard without flash
-
- rec: pandoc
- general markup converter
-
- rec: texlive-xetex
- TeX Live: XeTeX and packages
-
- enh: adapterremoval
- rapid adapter trimming, identification, and read merging of gene sequences
-
- enh: afterqc
- Pakket niet beschikbaar
-
- enh: bamtools
- toolkit for manipulating BAM (genome alignment) files
-
- enh: bbmap
- BBTools genomic aligner and other tools for short sequences
-
- enh: bcftools
- genomic variant calling and manipulation of VCF/BCF files
-
- enh: bcl2fastq
- Pakket niet beschikbaar
-
- enh: biobambam2
- tools for early stage alignment file processing
-
- enh: biobloomtools
- Pakket niet beschikbaar
-
- enh: biscuit
- Pakket niet beschikbaar
-
- enh: bismark
- Pakket niet beschikbaar
-
- enh: bowtie
- Ultrafast memory-efficient short read aligner
-
- enh: bowtie2
- ultrafast memory-efficient short read aligner
-
- enh: busco
- benchmarking sets of universal single-copy orthologs
-
- enh: clipandmerge
- Pakket niet beschikbaar
-
- enh: clusterflow
- Pakket niet beschikbaar
-
- enh: conpair
- Pakket niet beschikbaar
-
- enh: cutadapt
- Clean biological sequences from high-throughput sequencing reads
-
- enh: damageprofiler
- Pakket niet beschikbaar
-
- enh: dedup
- Pakket niet beschikbaar
-
- enh: deeptools
- Pakket niet beschikbaar
-
- enh: disambiguate
- Pakket niet beschikbaar
-
- enh: dragen
- Pakket niet beschikbaar
-
- enh: fastp
- Ultra-fast all-in-one FASTQ preprocessor
-
- enh: fastq-screen
- Pakket niet beschikbaar
-
- enh: fastqc
- quality control for high throughput sequence data
-
- enh: featurecounts
- Pakket niet beschikbaar
-
- enh: fgbio
- Pakket niet beschikbaar
-
- enh: flash
- Fast Length Adjustment of SHort reads
-
- enh: flexbar
- flexible barcode and adapter removal for sequencing platforms
-
- enh: gatk
- Pakket niet beschikbaar
-
- enh: goleft-indexcov
- Pakket niet beschikbaar
-
- enh: happy
- Parser generator for Haskell
-
- enh: hicexplorer
- Pakket niet beschikbaar
-
- enh: hicpro
- Pakket niet beschikbaar
-
- enh: hicup
- Pakket niet beschikbaar
-
- enh: hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- enh: homer
- Pakket niet beschikbaar
-
- enh: htseq
- Pakket niet beschikbaar
-
- enh: interop
- Pakket niet beschikbaar
-
- enh: ivar
- functions broadly useful for viral amplicon-based sequencing
-
- enh: jellyfish
- count k-mers in DNA sequences
-
- enh: kaiju
- Pakket niet beschikbaar
-
- enh: kallisto
- near-optimal RNA-Seq quantification
-
- enh: kat
- Pakket niet beschikbaar
-
- enh: kraken
- assigning taxonomic labels to short DNA sequences
-
- enh: leehom
- Pakket niet beschikbaar
-
- enh: longranger
- Pakket niet beschikbaar
-
- enh: macs2
- Pakket niet beschikbaar
-
- enh: malt
- sequence alignment and analysis tool to process sequencing data
-
- enh: methylqa
- Pakket niet beschikbaar
-
- enh: minionqc
- Pakket niet beschikbaar
-
- enh: mirtop
- annotate miRNAs with a standard mirna/isomir naming
-
- enh: mirtrace
- Pakket niet beschikbaar
-
- enh: mosdepth
- BAM/CRAM depth calculation biological sequencing
-
- enh: mtnucratio
- Pakket niet beschikbaar
-
- enh: multivcfanalyzer
- Pakket niet beschikbaar
-
- enh: peddy
- Pakket niet beschikbaar
-
- enh: phantompeakqualtools
- Pakket niet beschikbaar
-
- enh: picard-tools
- Command line tools to manipulate SAM and BAM files
-
- enh: preseq
- Pakket niet beschikbaar
-
- enh: prokka
- rapid annotation of prokaryotic genomes
-
- enh: pycoqc
- computes metrics and generates Interactive QC plots
-
- enh: qorts
- Pakket niet beschikbaar
-
- enh: qualimap
- Pakket niet beschikbaar
-
- enh: quast
- Pakket niet beschikbaar
-
- enh: rna-seqc
- Pakket niet beschikbaar
-
- enh: rna-star
- ultrafast universal RNA-seq aligner
-
- enh: rockhopper
- system for analyzing bacterial RNA-seq data
-
- enh: rsem
- RNA-Seq by Expectation-Maximization
-
- enh: rseqc
- Pakket niet beschikbaar
-
- enh: salmon
- wicked-fast transcript quantification from RNA-seq data
-
- enh: samblaster
- marks duplicates, extracts discordant/split reads
-
- enh: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- enh: sargasso
- Pakket niet beschikbaar
-
- enh: seqyclean
- Pakket niet beschikbaar
-
- enh: sexdeterrmine
- Pakket niet beschikbaar
-
- enh: sickle
- windowed adaptive trimming tool for FASTQ files using quality
-
- enh: skewer
- post-processing of high-throughput DNA sequence reads
-
- enh: slamdunk
- Pakket niet beschikbaar
-
- enh: snpeff
- genetic variant annotation and effect prediction toolbox - tool
-
- enh: snpsplit
- Pakket niet beschikbaar
-
- enh: somalier
- Pakket niet beschikbaar
-
- enh: sortmerna
- tool for filtering, mapping and OTU-picking NGS reads
-
- enh: stacks
- pipeline for building loci from short-read DNA sequences
-
- enh: supernova
- Pakket niet beschikbaar
-
- enh: theta2
- Pakket niet beschikbaar
-
- enh: trimmomatic
- flexible read trimming tool for Illumina NGS data
-
- enh: varscan2
- Pakket niet beschikbaar
-
- enh: vcftools
- Collection of tools to work with VCF files
-
- enh: verifybamid
- Pakket niet beschikbaar