[ Bron: cat-bat ]
Pakket: cat-bat (5.3-2)
Verwijzigingen voor cat-bat
Debian bronnen:
Het bronpakket cat-bat downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Andreas Tille (QA-pagina)
- Nilesh Patra (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.
Andere aan cat-bat gerelateerde pakketten
|
|
|
|
-
- dep: diamond-aligner
- accelerated BLAST compatible local sequence aligner
-
- dep: prodigal
- Microbial (bacterial and archaeal) gene finding program
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)