Pakket: ltrsift (1.0.2-10)

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Homepage [www.zbh.uni-hamburg.de]

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postprocessing and classification of LTR retrotransposons

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Interface Toolkit: GTK, Purpose: use::analysing, use::browsing, Comparing, Data Organisation, use::viewing, x11::application

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depends

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dep: libc6 (>= 2.34)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libcairo2 (>= 1.2.4)

Cairo 2D vector graphics library
dep: libgdk-pixbuf-2.0-0 (>= 2.22.0)

GDK Pixbuf library
dep: libgenometools0t64 (>= 1.6.5+ds)

versatile genome analysis library
dep: libglib2.0-0t64 (>= 2.75.3)

GLib library of C routines
dep: libgtk2.0-0t64 (>= 2.18.0)

GTK graphical user interface library - old version
dep: libpango-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text

rec: last-align

genome-scale comparison of biological sequences
rec: ncbi-blast+

next generation suite of BLAST sequence search tools

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
mips64el	83,3 kB	479,0 kB	[overzicht]