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Pakket: libfastahack0 (1.0.0+dfsg-11 en anderen)

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library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

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Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha (unofficial port) 1.0.0+dfsg-11 23,7 kB82,0 kB [overzicht]
amd64 1.0.0+dfsg-11 26,6 kB87,0 kB [overzicht]
arm64 1.0.0+dfsg-11 23,7 kB87,0 kB [overzicht]
armel 1.0.0+dfsg-11 23,0 kB69,0 kB [overzicht]
armhf 1.0.0+dfsg-11 23,2 kB57,0 kB [overzicht]
hppa (unofficial port) 1.0.0+dfsg-11 27,6 kB78,0 kB [overzicht]
i386 1.0.0+dfsg-11 27,7 kB81,0 kB [overzicht]
ia64 (unofficial port) 1.0.0+dfsg-11 30,7 kB117,0 kB [overzicht]
m68k (unofficial port) 1.0.0+dfsg-11 25,1 kB73,0 kB [overzicht]
mips64el 1.0.0+dfsg-11 24,4 kB90,0 kB [overzicht]
ppc64 (unofficial port) 1.0.0+dfsg-11 26,4 kB145,0 kB [overzicht]
ppc64el 1.0.0+dfsg-11 26,7 kB87,0 kB [overzicht]
riscv64 1.0.0+dfsg-11+b1 24,8 kB66,0 kB [overzicht]
s390x 1.0.0+dfsg-11 25,0 kB77,0 kB [overzicht]
sh4 (unofficial port) 1.0.0+dfsg-11 27,9 kB81,0 kB [overzicht]
sparc64 (unofficial port) 1.0.0+dfsg-11 22,1 kB1.051,0 kB [overzicht]
x32 (unofficial port) 1.0.0+dfsg-11 25,5 kB69,0 kB [overzicht]