Pakket: r-cran-seurat (5.0.1-1) [debports]

Verwijzigingen voor r-cran-seurat

Debian bronnen:

Probleemrapporten

Het bronpakket downloaden:

Niet gevonden

Beheerders:

Externe bronnen:

Homepage [cran.r-project.org]

Vergelijkbare pakketten:

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

Andere aan r-cran-seurat gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6.1 (>= 2.37)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb
dep: libgcc-s1 (>= 4.2)

GCC support bibliotheek
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: libunwind8

library to determine the call-chain of a program - runtime
dep: r-api-4.0

virtueel pakket geboden door r-base-core
dep: r-cran-cluster

GNU R package for cluster analysis by Rousseeuw et al
dep: r-cran-cowplot

GNU R streamlined plot theme and plot annotations for 'ggplot2'
dep: r-cran-fastdummies

fast creation of dummy columns and rows from categorical variables
dep: r-cran-fitdistrplus

support fit of parametric distribution
dep: r-cran-future

R package: A Future API for R
dep: r-cran-future.apply

apply function to elements in parallel using futures
dep: r-cran-generics (>= 0.1.3)

GNU R common S3 generics not provided by base R methods
dep: r-cran-ggplot2 (>= 3.3.0)

implementation of the Grammar of Graphics
dep: r-cran-ggrepel

auto-position non-overlapping text labels in plots
dep: r-cran-ggridges

Ridgeline Plots in 'ggplot2'
dep: r-cran-httr

GNU R tools for working with URLs and HTTP
dep: r-cran-ica

Independent Component Analysis
dep: r-cran-igraph

GNU R network analysis and visualization
dep: r-cran-irlba

GNU R fast truncated SVD, PCA and symmetric eigendecomposition
dep: r-cran-jsonlite

Robust, High Performance JSON Parser and Generator for R
dep: r-cran-kernsmooth

GNU R package for kernel smoothing and density estimation
dep: r-cran-leiden (>= 0.3.1)

GNU R implementation of Leiden clustering algorithm
dep: r-cran-lifecycle

manage the life cycle of your GNU R package functions
dep: r-cran-lmtest

GNU R package for diagnostic checking in linear models
dep: r-cran-mass

GNU R package of Venables and Ripley's MASS
dep: r-cran-matrix (>= 1.5-0)

GNU R package of classes for dense and sparse matrices
dep: r-cran-matrixstats

GNU R methods that apply to rows and columns of a matrix
dep: r-cran-miniui

Shiny UI Widgets for Small Screens
dep: r-cran-patchwork

GNU R the composer of plots
dep: r-cran-pbapply

GNU R package providing progress bars for vectorized R functions
dep: r-cran-plotly (>= 4.9.0)

create interactive web graphics via 'plotly.js' in GNU R
dep: r-cran-png

GNU R package to read and write PNG images
dep: r-cran-progressr

GNU R inclusive, unifying API for progress updates
dep: r-cran-purrr

GNU R functional programming tools
dep: r-cran-rann

Fast Nearest Neighbour Search Using L2 Metric
dep: r-cran-rcolorbrewer

GNU R package providing suitable color palettes
dep: r-cran-rcpp (>= 1.0.7)

GNU R package for Seamless R and C++ Integration
dep: r-cran-rcppannoy (>= 0.0.18)

Rcpp bindings for Annoy (approximate nearest neighbors)
dep: r-cran-rcppeigen

GNU R package for Eigen templated linear algebra
dep: r-cran-rcpphnsw

R bindings for a Library for Approximate Nearest Neighbors
dep: r-cran-rcppprogress

interruptible progress bar for C++ in GNU R packages
dep: r-cran-reticulate

R interface to Python modules, classes, and functions
dep: r-cran-rlang

Functions for Base Types and Core R and 'Tidyverse' Features
dep: r-cran-rocr

GNU R package to prepare and display ROC curves
dep: r-cran-rspectra

GNU R solvers for large-scale eigenvalue and SVD problems
dep: r-cran-rtsne

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
dep: r-cran-scales

Scale functions for visualization
dep: r-cran-scattermore (>= 1.2)

GNU R scatterplots with more points
dep: r-cran-sctransform (>= 0.4.1)

Variance Stabilizing Transformations for Single Cell UMI Data
dep: r-cran-seuratobject (>= 5.0.0)

GNU R data structures for single cell data
dep: r-cran-shiny

GNU R web application framework
dep: r-cran-spatstat.explore

GNU R exploratory data analysis for the 'spatstat' family
dep: r-cran-spatstat.geom

GNU R geometrical functionality of the 'spatstat' package
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-uwot (>= 0.1.10)

GNU R uniform manifold approximation and projection (UMAP)

rec: r-bioc-biobase

base functions for Bioconductor
rec: r-bioc-biocgenerics

generic functions for Bioconductor
rec: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
rec: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
rec: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
rec: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
rec: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
rec: r-bioc-limma

linear models for microarray data
rec: r-bioc-monocle

clustering, differential expression, and trajectory analysis for RNA-Seq
rec: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
rec: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
rec: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
rec: r-bioc-summarizedexperiment

BioConductor assay container
rec: r-cran-ape

GNU R package for Analyses of Phylogenetics and Evolution
rec: r-cran-data.table

GNU R extension of Data.frame
rec: r-cran-ggrastr

Bioconductor rasterize layers for 'ggplot2'
rec: r-cran-hdf5r

GNU R interface to the 'HDF5' binary data format
rec: r-cran-metap

Meta-Analysis of Significance Values
rec: r-cran-mixtools

GNU R tools for analyzing finite mixture models
rec: r-cran-r.utils

GNU R various programming utilities
rec: r-cran-rsvd

Randomized Singular Value Decomposition
rec: r-cran-testthat

GNU R testsuite
rec: r-cran-vgam

GNU R package for estimating vector generalized additive models

r-cran-seurat downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
ia64 (unofficial port)	3.484,1 kB	4.397,0 kB	[overzicht]