[ Bron: unicycler ]
Pakket: unicycler (0.5.0+dfsg-1)
Verwijzigingen voor unicycler
Debian bronnen:
Het bronpakket unicycler downloaden:
- [unicycler_0.5.0+dfsg-1.dsc]
- [unicycler_0.5.0+dfsg.orig.tar.xz]
- [unicycler_0.5.0+dfsg-1.debian.tar.xz]
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Andreas Tille (QA-pagina)
- Liubov Chuprikova (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
Andere aan unicycler gerelateerde pakketten
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- dep: bcftools
- genomic variant calling and manipulation of VCF/BCF files
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: libc6 (>= 2.34)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: miniasm
- ultrafast de novo assembler for long noisy DNA sequencing reads
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: pilon
- automated genome assembly improvement and variant detection tool
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-setuptools
- Python3 Distutils Enhancements
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- dep: racon
- consensus module for raw de novo DNA assembly of long uncorrected reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: spades (>= 3.14)
- genome assembler for single-cell and isolates data sets
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- dep: zlib1g (>= 1:1.1.4)
- compressiebibliotheek - programma's
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- rec: unicycler-data
- hybrid assembly pipeline for bacterial genomes (data package)