Pakket: kleborate (2.4.1-3)

Verwijzigingen voor kleborate

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Het bronpakket kleborate downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

Andere aan kleborate gerelateerde pakketten

depends

recommends

suggests

enhances

dep: kaptive

obtain information about K and O types for Klebsiella genome assemblies
dep: kaptive-data

reference data for kaptive for Klebsiella genome assemblies
dep: mash

fast genome and metagenome distance estimation using MinHash
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics

kleborate downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	7.558,8 kB	62.170,0 kB	[overzicht]