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Pakket: unikmer (0.20.0-1 en anderen)

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Toolkit for nucleic acid k-mer analysis

unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers optional with TaxIDs but without count information.

K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik.

TaxIDs can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.

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unikmer downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 0.20.0-1+b9 3.111,6 kB10.116,0 kB [overzicht]
arm64 0.20.0-1+b9 2.652,7 kB9.516,0 kB [overzicht]
armhf 0.20.0-1+b9 2.739,1 kB9.678,0 kB [overzicht]
i386 0.20.0-1+b9 2.983,6 kB9.695,0 kB [overzicht]
ppc64el 0.20.0-1+b9 2.644,5 kB9.900,0 kB [overzicht]
riscv64 0.20.0-1+b9 2.758,8 kB9.643,0 kB [overzicht]
s390x 0.20.0-1+b9 2.822,0 kB10.668,0 kB [overzicht]