Pakket: libfreecontact0v5 (1.0.21-7 en anderen)

Verwijzigingen voor libfreecontact0v5

Debian bronnen:

Het bronpakket freecontact downloaden:

Beheerders:

Externe bronnen:

Homepage [rostlab.org]

Vergelijkbare pakketten:

fast protein contact predictor library

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

Tags: Role: Shared Library

Andere aan libfreecontact0v5 gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libblas3

Basic Linear Algebra Reference implementations, shared library

of libblas.so.3

virtueel pakket geboden door libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base
dep: libc6 (>= 2.15) [niet arm64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.17) [arm64]
dep: libgcc1 (>= 1:3.0) [niet armhf]

GCC support bibliotheek

dep: libgcc1 (>= 1:3.5) [armhf]
dep: libgfortran5 (>= 8)

Runtime library for GNU Fortran applications
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: liblapack3

Library of linear algebra routines 3 - shared version

of liblapack.so.3

virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas-base
dep: libquadmath0 (>= 4.6) [amd64, i386]

GCC Quad-Precision Math Library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

libfreecontact0v5 downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.0.21-7+b1	73,2 kB	194,0 kB	[overzicht]
arm64	1.0.21-7+b1	64,9 kB	165,0 kB	[overzicht]
armhf	1.0.21-7+b1	55,3 kB	117,0 kB	[overzicht]
i386	1.0.21-7+b1	61,6 kB	165,0 kB	[overzicht]