Pakket: libseqlib-dev (1.1.2+dfsg-3)
Verwijzigingen voor libseqlib-dev
Debian bronnen:
Het bronpakket libseqlib downloaden:
- [libseqlib_1.1.2+dfsg-3.dsc]
- [libseqlib_1.1.2+dfsg.orig.tar.xz]
- [libseqlib_1.1.2+dfsg-3.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
This package contains the header files and static library.
Andere aan libseqlib-dev gerelateerde pakketten
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- dep: libbwa-dev
- Burrows-Wheeler Aligner source files
-
- dep: libfml-dev
- development headers for libfml
-
- dep: libhts-dev (>= 1.3.2-3)
- development files for the HTSlib
-
- dep: libhts-private-dev
- private development files for the HTSlib (use with care)
-
- dep: libjsoncpp-dev
- library for reading and writing JSON for C++ (devel files)
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- dep: libseqlib1 (= 1.1.2+dfsg-3)
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data